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The Workshop on Intelligent Computational Methods in Molecular Dynamics 分子动力学研究中的智能计算方法研讨会

Molecular Kinetics with Koopman Generators and Random Fourier Features

Speaker

Feliks Nüske , 马克斯普朗克复杂技术系统动力学研究所 Max Planck Institute for Dynamics of Complex Technical Systems

Time

23 Nov, 11:05 - 11:40

Abstract

In this talk, I will present recent work on estimating kinetic properties of molecular systems - such as transition timescales and correlation functions - using models for the Koopman generator. I will show that random Fourier features - a low-rank approximation technique for kernel methods - provide a versatile and efficient framework to estimate these models from data. I will present three use cases: first, a benchmark study on estimating slow transition timescales. Second, interpolation of kinetic properties across temperatures using generative models. Third, learning of coarse grained models which preserve transition timescales.

Bio

Feliks Nüske received his Ph.D. in Mathematics from Freie Universität Berlin, Germany, in 2017. He subsequently held postdoctoral positions as a Rice Academy Fellow at Rice University (U.S.), as well as at Universität Paderborn (Germany). Since 2022, he has been an independent Max-Planck Research Group Leader at the MPI for Dynamics of Complex Technical Systems in Magdeburg, Germany. His research interests include modeling and analysis of stochastic dynamics, machine learning for dynamical systems, as well as modeling and simulation of molecular systems.